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Prof. Jiguang WANG's Publications


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Article


Liu, Ming; Yan, Qian; Sun, Yi; Nam, Yoonhee; Hu, Liang; Loong, Jane H. C.; Qi, Ouyang; Zhang, Yu; Li, Hao-Long; Kong, Fan-En; Li, Lei; Li, Yan; Li, Mei-Mei; Cheng, Wei; Jiang, Ling-Xi; Fang, Shuo; Yang, Xiao-Dong; Mo, Jia-Qiang; Gong, Yuan-Feng; Tang, Yun-Qiang; Li, Yan; Yuan, Yun-Fei; Ma, Ning-Fang; Lin, Ge; Ma, Stephanie; Wang, Jiguang; Guan, Xin-Yuan, "A hepatocyte differentiation model reveals two subtypes of liver cancer with different oncofetal properties and therapeutic targets", Proceedings of the National Academy of Sciences of the United States of America, v. 117, (11), March 2020, p. 6103-6113 (2020)

Cheung, Pak Hang Peter; Jiang, Biaobin; Booth, Gregory T.; Chong, Tin Hang; Unarta, Ilona Christy; Wang, Yuqing; Suarez, Gianmarco Domenico; Wang, Jiguang; Lis, John T.; Huang, Xuhui, "Identifying Transcription Error-Enriched Genomic Loci Using Nuclear Run-On Circular-Sequencing Coupled with Background Error Modeling", Journal of Molecular Biology, 20 April 2020 (2020)

Oldrini, Barbara; Vaquero-Siguero, Nuria; Mu, Quanhua; Kroon, Paula; Zhang, Ying; Galán-Ganga, Marcos; Bao, Zhaoshi; Wang, Zhang; Liu, Hanjie; Sa, Jason K.; Zhao, Junfei; Kim, Hoon; Rodriguez-Perales, Sandra; Nam, Do-Hyun; Verhaak, Roel G. W.; Rabadan, Rual; Jiang, Tao; Wang, Jiguang; Squatrito, Massimo, "MGMT genomic rearrangements contribute to chemotherapy resistance in gliomas", Nature Communications, v. 11, August 2020, article number 3883 (2020)

Liu, Zhaoqi; Yoshimi, Akihide; Wang, Jiguang; Cho, Hana; Lee, Stanley Chun-Wei; Ki, Michelle; Bitner, Lillian; Chu, Timothy; Shah, Harshal; Liu, Bo; Mato, Anthony R.; Ruvolo, Peter; Fabbri, Giulia; Pasqualucci, Laura; Abdel-Wahab, Omar; Rabadan, Raul, "Mutations in the RNA Splicing Factor SF3B1 Promote Tumorigenesis through MYC Stabilization", Cancer Discovery, v. 10, (6), June 2020, p. 806-821 (2020)

Rothschild, Gerson; Zhang, Wanwei; Lim, Junghyun; Giri, Pankaj Kumar; Laffleur, Brice; Chen, Yiyun; Fang, Mingyan; Chen, Yuling; Nair, Lekha; Liu, Zhi-Ping; Deng, Haiteng; Hammarstrom, Lennart; Wang, Jiguang; Basu, Uttiya, "Noncoding RNA transcription alters chromosomal topology to promote isotype-specific class switch recombination", Science Immunology, v. 5, (44), February 2020, article number eaay5864 (2020)

Wu, Xiandeng; Cai, Qixu; Chen, Yiyun; Zhu, Shihan; Mi, Jing; Wang, Jiguang; Zhang, Mingjie, "Structural Basis for the High-Affinity Interaction between CASK and Mint1", Structure, 28 April 2020 (2020)

Lui, Ming-Hong; Jiang, Biaobin; Bao, Zhao-Shi; Wang, Jiguang, "A Mini-review on Spatiotemporal Evolution of Glioma Under Treatment", Progress in Biochemistry and Biophysics, 18 September 2019 (2019)

Mu, Quanhua; Wang, Jiguang, "CNAPE: A Machine Learning Method for Copy Number Alteration Prediction from Gene Expression", IEEE/ACM Transactions on Computational Biology and Bioinformatics, 1 October 2019 (2019)

Mu, Quanhua; Chen, Yiyun; Wang, Jiguang, "Deciphering Brain Complexity Using Single-cell Sequencing", Genomics, Proteomics & Bioinformatics, v. 17, (4), Augusr 2019, p. 344-366 (2019)

Ji, Tiantian; Zhang, Lina; Deng, Mingxi; Huang, Shengshuo; Wang, Ying; Pham, Tri Thanh; Smith, Andrew Alan; Sridhar, Varun; Cabernard, Clemens; Wang, Jiguang; Yan, Yan, "Dynamic MAPK signaling activity underlies a transition from growth arrest to proliferation in Drosophila scribble mutant tumors", Disease Models and Mechanism, 1 August 2019, article number dmm.040147 (2019)

Xu, L.M.; He, M.H.; Dai, Z.H.; Yu, J.; Wang, Jiguang; Li, X.C.; Jiang, Biaobin; Ke, Z.F.; Su, T.H.; Peng, Z.W.; Guo, Y.; Chen, Z.B.; Chen, S.L.; Peng, S.; Kuang, M., "Genomic and transcriptional heterogeneity of multifocal hepatocellular carcinoma", Annals of Oncology, v. 30, (6), p. 990-997 (2019)

Duren, Zhana; Wang, Yaling; Wang, Jiguang; Zhao, Xing Ming; Lv, Le; Li, Xiaobo; Liu, Jingdong; Zhu, XinGuang; Chen, Luonan; Wang, Yong, "Hierarchical graphical model reveals HFR1 bridging circadian rhythm and flower development in Arabidopsis thaliana", NPJ Systems Biology and Applications, v. 5, August 2019, article number 28, p. 1-11 (2019)

Scuoppo, Claudio; Wang, Jiguang; Persaud, Mirjana; Mittan, Sandeep K.; Basso, Katia; Pasqualucci, Laura; Rabadan, Raul; Inghirami, Giorgio; Grandori, Carla; Bosch, Francesc; Dalla-favera, Riccardo, "Repurposing dasatinib for diffuse large B cell lymphoma", PNAS, v. 116, (34), August 2019, p. 16981-16986 (2019)

Deng, Mingxi; Wang, Ying; Zhang, Lina; Yang, Yang; Huang, Shengshuo; Wang, Jiguang; Ge, H.; Ishibashi, Toyotaka; Yan, Yan, "Single cell transcriptomic landscapes of pattern formation, proliferation and growth in <i>Drosophila</i> wing imaginal discs", Development, v. 146, (18), September 2019, article number dev179754, p. 1-10 (2019)

Singer, Ruth A.; Arnes, Luis; Cui, Yi; Wang, Jiguang; Gao, Yuqian; Guney, Michelle A.; Burnum-Johnson, Kristin E.; Rabadan, Raul; Ansong, Charles; Orr, Galya; Sussel, Lori, "The Long Noncoding RNA Paupar Modulates PAX6 Regulatory Activities to Promote Alpha Cell Development and Function", CELL METABOLISM, v.30, (6), December 2019, p. 1091 (2019)

Arnes, Luis; Liu, Zhaoqi; Wang, Jiguang; Maurer, Hans Carlo; Sagalovskiy, Irina; Sanchen-Martin, Marta; Bommarkanti, Nikhil; Garofalo, Diana C.; Balderes, Dina A.; Sussel, Lori; Olive, Kenneth P.; Rabadan, Raul, "Comprehensive characterisation of compartment-specific long non-coding RNAs associated with pancreatic ductal adenocarcinoma", Gut, 10 February 2018 (2018)

Sun, Kun; Wang, Jiguang; Wang, Huating; Sun, Hao, "GeneCT: a generalizable cancerous status and tissue origin classifier for pan-cancer biopsies", Bioinformatics, 27 June 2018 (2018)

Raponi, S.; Del Giudice, I.; Marinelli, M.; Wang, Jiguang; Cafforio, L.; Ilari, C.; Piciocchi, A.; Messina, M.; Bonina, S.; Tavolaro, S.; Bordyuh, M.; Mariglia, P.; Peragine, N.; Mauro, F. R.; Chiaretti, S.; Molica, S.; Gentile, M.; Visentin, A.; Trentin, L.; Rigolin, G. M.; Cuneo, A.; Diop, F.; Rossi, D.; Gaidano, G.; Guarini, A.; Rabadan, R.; Foa, R., "Genetic landscape of ultra-stable chronic lymphocytic leukemia patients", Annals of Oncology, v. 29, (4), April 2018, p. 966-972 (2018)

Cimino, Patrick J.; Kim, Youngmi; Wu, Hua-Jun; Alexander, Jes; Wirsching, Hans-Georg; Szulzewsky, Frank; Pitter, Ken; Ozawa, Tatsuya; Wang, Jiguang; Vazquez, Julio; Arora, Sonali; Rabadan, Raul; Levine, Ross; Michor, Franziska; Holland, Eric C., "Increased HOXA5 Expression Provides a Selective Advantage for Gain of Whole Chromosome 7 in IDH Wild-type Glioblastoma", Genes and Development, v. 32, (7-8), April 2018, p. 512-523 (2018)

Hu, Huimin; Mu, Quanhua; Bao, Zhaoshi; Chen, Yiyun; Liu, Yanwei; Chen, Jing; Wang, Kuanyu; Wang, Zheng; Nam, Yoonhee; Jiang, Biaobin; Sa, Jason K; Cho, Hee-Jin; Her, Nam-Gu; Zhang, Chuanbao; Zhao, Zheng; Zhang, Ying; Zeng, Fan; Wu, Fan; Kang, Xun; Liu, Yuqing; Qian, Zenghui; Wang, Zhiliang; Huang, Ruoyu; Wang, Qiangwei; Zhang, Wei; Qiu, Xiaoguang; Li, Wenbin; Nam, Do-Hyun; Fan, Xiaolong; Wang, Jiguang (corresponding); Jiang, Tao, "Mutational Landscape of Secondary Glioblastoma Guides MET-Targeted Trial in Brain Tumor", Cell, v. 175, (6), November 2018, p. 1665-1678 (2018)

Lee, Jin-Ku; Liu, Zhaoqi; Sa, Jason K.; Shin, Sang; Wang, Jiguang (co-first); Bordyuh, Mykola; Cho, Heejin; Elliott, Oliver; Chu, Timothy; Choi, Seung Won; Rosenbloom, Daniel I. S.; Lee, In-Hee; Shin, Yong Jae; Kang, Hyun Ju; Kim, Donggeon; Kim, Sun Young; Sim, Moon-Hee; Kim, Jusun; Lee, Taehyang; Seo, Yun Jee; Shin, Hyemi; Lee, Mijeong; Kim, Sung Heon; Kwon, Yong-Jun; Oh, Jeong-Woo; Song, Minsuk; Kim, Misuk; Kong, Doo-Sik; Choi, Jung Won; Seol, Ho Jun; Lee, Jung-Il; Kim, Seung Tae; Park, Joon Oh; Kim, Kyoung-Mee; Song, Sang-Yong; Lee, Jeong-Won; Kim, Hee-Cheol; Lee, Jeong Eon; Choi, Min Gew; Seo, Sung Wook; Shim, Young Mog; Zo, Jae Ill; Jeong, Byong Chang; Yoon, Yeup; Ryu, Gyu Ha; Kim, Nayoung K. D.; Bae, Joon Seol; Park, Woong-Yang; Lee, Jeongwu; Verhaak, Roel G. W.; Iavarone, Antonio; Lee, Jeeyun; Rabadan, Raul; Nam, Do-Hyun, "Pharmacogenomic landscape of patient-derived tumor cells informs precision oncology therapy", Nature Genetics, v. 50, (10), October 2018, p. 1399-1411 (2018)

Giudice, I Del; Rigolin, G. M.; Raponi, S.; Cafforio, L.; Ilari, C.; Wang, Jiguang; Bordyuh, M.; Piciocchi, A.; Marinelli, M.; Nanni, M.; Tavolaro, S.; Filetti, M.; Bardi, A.; Tammiso, E.; Volta, E.; Negrini, M.; Saccenti, E.; Mauro, F. R.; Rossi, D.; Gaidano, G.; Guarini, A.; Rabadan, R.; Cuneo, A.; Foà, R., "Refined karyotype-based prognostic stratification of chronic lymphocytic leukemia with a low-and very-low-risk genetic profile", Leukemia, v. 32, (2), 1 February 2018, p. 543-546 (2018)

Hyunju Oh, Yenkel Grinberg-Bleyer, Will Liao, Dillon Maloney, Pingzhang Wang, Zikai Wu, Jiguang Wang, Dev M.Bhatt, Nicole Heise, Roland M. Schmid, Matthew S. Hayden, Ulf Klein, Raul Rabadan, Sankar Ghosh, "An NF-kB Transcription-Factor-Dependent Lineage-Specific Transcriptional Program Promotes Regulatory T Cell Identity and Function", Immunity (2017)

Madubata, Chioma J.; Roshan-ghias, Alireza; Chu, Timothy; Resnick, Samuel; Zhao, Junfei; Arnes, Luis; Wang, Jiguang; Rabadan, Raul, "Identification of Potentially Oncogenic Alterations from Tumor-only Samples Reveals Fanconi Anemia Pathway Mutations in Bladder Carcinomas", NPJ Genomic Medicine, v. 2, (1), December 2017, article number 32 (2017)

Skamagki, Maria; Zhang, Cheng; Ross, Christian A.; Ananthanarayanan, Aparna; Liu, Zhong; Mu, Quanhua; Basu, Uttiya; Wang, Jiguang; Zhao, Rui; Li, Hu; Kim, Kitai, "RNA Exosome Complex-Mediated Control of Redox Status in Pluripotent Stem Cells", Stem Cell Reports, v.9, (4), Oct 2017, p. 1053-1061 (2017)

Ilaria Del Giudice, Gian Matteo rigolin, Sara Raponi, Luciana Cafforio, Caterina Ilari, Mykola Bordyuh, Jiguang Wang, Alfonso Piciocchi, Marilisa Marinelli, Mauro Nanni, Simona Tavolaro, Marco Filetti, Antonella Bardi, Elisa Tammiso, eleonora volta, Massimo Negrini, Elena Saccenti, Francesca Mauro, Davide Rossi, Gianluca Gaidano, Anna Guarini, Raul Rabadan, Antonio Cuneo, and Robin Foa, "Refined karyotype-based prognostic stratification of chronic lyphocytic leukemia with a low and very-low risk genetic profile", Leukemia (2017)

Lee, Jin-Ku; Wang, Jiguang (co-first); Sa, Jason K.; Ladewig, Erik; Lee, Hae-Ock; Lee, In-Hee; Kang, Hyun Ju; Rosenbloom, Daniel S.; Camara, Pablo G.; Liu, Zhaoqi; Van Nieuwenhuizen, Patrick; Jung, Sang Won; Choi, Seung Won; Kim, Junhyung; Chen, Andrew; Kim, Kyu-Tae; Shin, Sang; Seo, Yun Jee; Oh, Jin-Mi; Shin, Yong Jae; Park, Chul-Kee; Kong, Doo-Sik; Seol, Ho Jun; Blumberg, Andrew; Lee, Jung-Il; Iavarone, Antonio; Park, Woong-Yang; Rabadan, Raul; Nam, Do-Hyun, "Spatiotemporal Genomic Architecture Informs Precision Oncology in Glioblastoma", Nature Genetics, v. 49, (4), March 2017, p. 594-599 (2017)

Wang, Jiguang; Cazzato, Emanuela; Ladewig, Erik; Frattini, Véronique; Zairis, Sakellarios; Abate, Francesco; Liu, Zhaoqi; Elliott, Oliver; Shin, Yongjae; Lee, Jinku; Lee, Inhee; Park, Woongyang; Eoli, Marica; Blumberg, Andrew J.; Lasorella, Anna; Nam, Dohyun; Finocchiaro, Gaetano; Iavarone, Antonio; Rabadan, Raul, "Clonal evolution of glioblastoma under therapy", Nature Genetics, v. 48, (7), 2016, Jul, p. 768-776 (2016)

Giudice, Ilaria Del; Raponi, Sara; Marinelli, Marilisa; Wang, Jiguang; Cafforio, Luciana; Ilari, Caterina; Messina, Monica; Bonina, Silvia; Tavolaro, Simona; Bordyuh, Mykola; Mauro, Francesca Romana; Chiaretti, Sabina; Rossi, Davide; Gaidano, Gianluca; Guarini, Anna; Rabadan, Raul; Foà, Robin, "Genetic Landscape and Gene Expression Profile of Chronic Lymphocytic Leukemia Patients with Ultra-Stable Disease", Clinical Lymphoma Myeloma and Leukemia, v. 16, Supplement 2, September 2016, p. S42–S43 (2016)

Del Giudice, Ilaria; Marinelli, Marilisa; Wang, Jiguang; Bonina, Silvia; Messina, Monica; Chiaretti, Sabina; Ilari, Caterina; Cafforio, Luciana; Raponi, Sara; Mauro, Francesca Romana; Di Maio, Valeria J M; De Propris, Maria Stefania; Nanni, Mauro; Ciardullo, Carmela; Rossi, Davide; Gaidano, Gianluca Luca; Guarini, Anna R.; Rabadan, Raul; Foa, Robin, "Inter- and intra-patient clonal and subclonal heterogeneity of chronic lymphocytic leukaemia: evidences from circulating and lymph nodal compartments", British Journal of Haematology, v. 172, (3), February 2016, p.371-383 (2016)

Yamamoto, Kenta; Wang, Jiguang; Sprinzen, Lisa; Xu, Jun; Haddock, Christopher J.; Li, Chen; Lee, Brian J.; Loredan, Denis G.; Jiang, Wenxia; Vindigni, Alessandro; Wang, Dong; Rabadan, Raul; Zha, Shan, "Kinase-dead ATM protein is highly oncogenic and can be preferentially targeted by Topo-isomerase I inhibitors", eLife, v. 5, (JUN2016), 2016, Jun, Article number e14709 (2016)

Ceccarelli, Michele; Barthel, Floris P.; Malta, Tathiane Maistro Aistro; Sabedot, Thaís S.; Salama, Sofie Reda; Murray, Bradley A.; Morozova, Olena A.; Newton, Yulia; Radenbaugh, Amie J.; Pagnotta, Stefano Maria; Anjum, Samreen; Wang, Jiguang; Manyam, Ganiraju C.; Zoppoli, Pietro; Ling, Shiyun; Rao, Arjun A.; Grifford, Mia; Cherniack, Andrew D.; Zhang, Hailei; Poisson, Laila M.; Carlotti, Carlos Gilberto; Tirapelli, Daniela Pretti Da Cunha; Rao, Arvind; Mikkelsen, Tom; Lau, Ching; Yung, Alfred; Rabadán, Raúl; Huse, Jason T.; Brat, Daniel J.; Lehman, Norman L.; Barnholtz-Sloan, Jill S.; Zheng, Siyuan; Hess, Kenneth R.; Rao, Ganesh; Meyerson, Matthew; Beroukhim, Rameen; Cooper, Lee A D; Akbani, Rehan; Wrensch, Margaret R.; Haussler, David H.; Aldape, Kenneth D.; Laird, Peter W.; Gutmann, David H.; Noushmehr, Houtan; Iavarone, Antonio; Verhaak, Roel G W, "Molecular Profiling Reveals Biologically Discrete Subsets and Pathways of Progression in Diffuse Glioma", Cell, v. 164, (3), 2016, Jan, p. 550-563 (2016)

Wang, Jiguang; Kribelbauer, Judith; Rabadan, Raul, "Network Propagation Reveals Novel Features Predicting Drug Response of Cancer Cell Lines", Current Bioinformatics, v. 11, (2), April 2016, p. 203-210 (2016)

Zhang, Chuanchao; Wang, Jiguang; Zhang, Chao; Liu, Juan; Xu, Dong; Chen, Luonan, "Network stratification analysis for identifying function-specific network layers", Molecular BioSystems, v. 12, (4), 2016, p. 1232-1240 (2016)

Messina, Monica; Chiaretti, Sabina; Wang, Jiguang; Fedullo, Anna Lucia Ucia; Peragine, Nadia; Gianfelici, Valentina; Piciocchi, Alfonso; Brugnoletti, Fulvia; Di Giacomo, Filomena; Pauselli, Simona; Holmes, Antony B.; Puzzolo, Maria Cristina; Ceglie, Giulia; Apicella, Valerio; Mancini, Marco J.; Kronnie, Geertruy Te; Testi, Anna Maria; Vitale, Antonella M.; Vignetti, Marco; Guarini, Anna R.; Rabadán, Raúl; Foà, Robin, "Prognostic and therapeutic role of targetable lesions in B-lineage acute lymphoblastic leukemia without recurrent fusion genes", Oncotarget, v. 7, (12), 2016, Mar, p. 13886-13901 (2016)

Melamed, Rachel D.; Wang, Jiguang; Iavarone, Antonio; Rabadan, Raul, "An information theoretic method to identify combinations of genomic alterations that promote glioblastoma", Journal of Molecular Cell Biology, v. 7, (3), 2015, June, p. 203-213 (2015)

Pefanis, Evangelos; Wang, Jiguang (co-first); Rothschild, Gerson; Lim, Junghyun; Kazadi, David; Sun, Jianbo; Federation, Alexander J.; Chao, Jaime; Elliott, Oliver; Liu, Zhiping; Economides, Aris N.; Bradner., James E.; Rabadan, Raul; Basu, Uttiya, "RNA exosome-regulated long non-coding RNA transcription controls super-enhancer activity", Cell, v. 161, (4), 2015, May, p. 774-789 (2015)

Sun, Jianbo; Wang, Jiguang; Pefanis, Evangelos; Chao, Jaime; Rothschild, Gerson; Tachibana, Isao; Chen, Jun Kui; Ivanov, Ivaylo I.; Rabadan, Raul; Takeda, Yoshito; Basu, Uttiya, "Transcriptomics identify CD9 as a marker of murine IL10-competent regulatory B cells", Cell Reports, v. 13, (6), 2015, November, p. 1110-1117 (2015)

Rossi, Davide; Khiabanian, Hossein; Spina, Valeria; Ciardullo, Carmela; Bruscaggin, Alessio; Fama, Rosella; Rasi, Silvia; Monti, Sara; Deambrogi, Clara; De Paoli, Lorenzo; Wang, Jiguang; Gattei, Valter; Guarini, Anna R.; Foa, Robin; Rabadan, Raul; Gaidano, Gianluca Luca, "Clinical Impact of Small TP53 Mutated Subclones in Chronic Lymphocytic Leukemia", Blood, v. 123, (14), 2014, April, p. 2139-2147 (2014)

Pefanis, Evangelos; Wang, Jiguang (co-first); Chao, Jaime; Rothschild, Gerson; Lim, Junghyun; Rabadan, Raul; Economides, Aris N.; Basu, Uttiya, "Noncoding RNA Transcription Targets AID to Divergently Transcribed Loci in B Cells", Nature, v. 514, (7522), 2014, Oct, p. 389-393 (2014)

Wang Jiguang, "PU.1 is essential for MLL leukemia partially via crosstalk with the MEIS/HOX pathway", Leukemia, v. 28, (7), 2014, July, p. 1436-1448 (2014)

Wang, Jiguang, "The Research on Molecular Network Models of Complex Disease", SCIENTIA SINICA Mathematica, v. 44, (4), 2014, p. 317-328 (2014)

Wang, Jiguang (corresponding); Khiabanian, Hossein; Rossi, Davide; Fabbri, Giulia; Gattei, Valter; Forconi, Francesco; Laurenti, Luca; Marasca, Roberto; Del Poeta, Giovanni; Foa, Robin; Pasqualucci, Laura; Gaidano, Gianluca Luca; Rabadan, Raul, "Tumor evolutionary directed graphs and the history of chronic lymphocytic leukemia", eLife, v. 3, 2014, Dec, Article Number e02869 (2014)

Wang, Jiguang; Sun, Yidan; Zheng, Si; Zhang, Xiang-Sun; Zhou, Huarong; Chen, Luonan, "APG: an active protein-gene network model to quantify regulatory signals in complex biological systems", Scientific Reports, v. 3, January 2013, article number 1097 (2013)

Sun, Jianbo; Keim, Celia D.; Wang, Jiguang; Kazadi, David; Oliver, Paula M.; Rabadan, Raul; Basu, Uttiya, "E3-ubiquitin Ligase Nedd4 Determines the Fate of AID-associated RNA Polymerase II in B cells", Genes and Development, v. 27, (16), August 2013, p. 1823-1833 (2013)

Fabbri, Giulia; Khiabanian, Hossein; Holmes, Antony B.; Wang jiguang; Messina, Monica; Mullighan, Charles G.; Pasqualucci, Laura; Rabadan, Raul; Dalla- favera, Riccardo Dalla, "Genetic Lesions Associated with Chronic Lymphocytic Leukemia Transformation to Richter Syndrome", Journal of Experimental Medicine, v. 210, (11), October 2013, p. 2273-2288 (2013)

Zhang, Chao; Wang, Jiguang (co-first); Hanspers, Kristina; Xu, Dong; Chen, Luonan; Pico, Alexander R., "NOA: A cytoscape plugin for network ontology analysis", Bioinformatics, v. 29, (16), 2013, August, p, 2066-2067 (2013)

Liu, Xiaoping; Wang, Jiguang; Chen, Luonan, "Whole-exome Sequencing Reveals Recurrent Somatic Mutation Networks In Cancer", Cancer Letters, v. 340, (2), November 2013, p. 270-276 (2013)

Ren, Xianwen; Wang, Yong; Wang, Jiguang; Zhang, Xiangsun, "A unified computational model for revealing and predicting subtle subtypes of cancers", BMC Bioinformatics, v. 13, (1), 1 May 2012, Article number 70 (2012)

Liu, Zhiping; Wang, Jiguang; Qiu, Yuqing; Leung, Ross Ka Kit; Zhang, Xiangsun; Tsui, Stephen Kwok-Wing; Chen, Luonan, "Inferring a protein interaction map of Mycobacterium tuberculosis based on sequences and interologs", BMC Bioinformatics, v. 13, (SUPPL.7), May 2012, Article number S6 (2012)

Song, Wei; Wang, Jiguang; Yang, Ying; Jing, Naihe; Zhang, Xiangsun; Chen, Luonan; Wu, Jiarui, "Rewiring drug-activated p53-regulatory network from suppressing to promoting tumorigenesis", Journal of Molecular Cell Biology, v. 4, (4), August 2012, p. 197-206 (2012)

Wang, Jiguang, "The coding genome of splenic marginal zone lymphoma: Activation of NOTCH2 and other pathways regulating marginal zone development", Journal of Experimental Medicine, v. 209, (9), Aug 2012, p. 1537-1551 (2012)

Wang, Jiguang; Huang, Qiang; Liu, Zhiping; Wang, Yong; Wu, Lingyun; Chen, Luonan; Zhang, Xiangsun, "NOA: a novel Network Ontology Analysis method", Nucleic Acids Research, v. 39, (13), 2011, Jul, p. e87 (2011)

Zhou, Huarong; Saito, Shigeru; Piao, Guanying; Liu, Zhiping; Wang, Jiguang; Horimoto, Katsuhisa; Chen, Luonan, "Network screening of Goto-Kakizaki rat liver microarray data during diabetic progression", BMC Systems Biology, v. 5, Issue SUPPL. 1, 20 June 2011, Article number S16 (2011)

Wang, Yongcui; Wang, Jiguang; Yang, Zhixia; Deng, Naiyang, "Sequence-based protein-protein interaction prediction via support vector machine", Journal of Systems Science and Complexity, v. 23, (5), October 2010, p. 1012-1023 (2010)

Wang, Jiguang; Zhang, Shihua; Wang, Yong; Chen, Luonan; Zhang, Xiangsun, "Disease-Aging Network Reveals Significant Roles of Aging Genes in Connecting Genetic Diseases", PLoS Computational Biology, v. 5, (9), 2009, Sep, Article number e1000521 (2009)

Zhang, Xiangsun; Wang, Ruisheng; Wang, Yong; Wang, Jiguang; Qiu, Yuqing; Wang, Li; Chen, Luonan, "Modularity optimization in community detection of complex networks", Europhysics Letters, v. 87, (3), 1 August 2009, Article number 38002 (2009)

Wang, Lin; Qiu, Yuqing; Wang, Jiguang; Zhang, Xiangsun, "Recognition of Structure Similarities in Proteins", Journal of Systems Science and Complexity, v. 21, (4), 2008, p. 657-667 (2008)

Wang, Jiguang; Qiu, Yuqing; Wang, Ruisheng; Zhang, Xiangsun, "Remarks on network community properties", Journal of Systems Science and Complexity, v. 21, (4), December 2008, p. 629-636 (2008)

Conference paper


Liu, Zhiping; Wang, Jiguang; Qiu, Yuqing; Leung, Ross Ka Kit; Zhang, Xiangsun; Tsui, Stephen Kwok-Wing; Chen, Luonan, "Inferring Protein-Protein Interactions Based on Sequences and Interologs in Mycobacterium Tuberculosis", Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), v. 6840 LNBI, 2011, p. 91-96 (2012)

Wang, Yong; Wang, Jiguang; Chen, Chen; Zhang, Xiangsun, "A Regularized Optimization Model for Community Identification in Complex Networks", Operations Research and its Application: In Engineering, Technology and Management: Lecture Notes in Operations Research, v. 14, 2011, p. 147-156 (2011)

Zhao, Junfei; Wang, Jiguang; Zhang, Xiangsun, "A SVC-based Method to Detect Multi-scalar Noisy Communities in Complex Networks", Operations Reasearch and Its Applications: in Engineering, Technology and Management, v. 14, 2011, p.133-143 (2011)

Xu, Shoujun; Wang, Jiguang; Zhang, Junhua; Zhang, Xiangsun, "Multiple Resolution Community Structure Analysis", Operations Research and its Applications: In Engineering, Technology and Management: Lecture Notes in Operations Research, v. 14, 2011, p. 334-349 (2011)

Wang, Jiguang; Wang, Yong; Ren, Xianwen; Guo, Wei; Chen, Luonan, "Uncover the Transient Transcriptional Regulations by a Novel Sliding Window Correlation Strategy", Computational System Biology, v. 13, 2010, p.235-242 (2010)

Wang, Jiguang; Wang, Lin; Qiu, Yuqing; Wang, Yong; Zhang, Xiangsun, "A Constrained Optimization Method for Community Detection", Optimization and Systems Biology: Lecture Notes in Operations Research, v. 11, p. 142-150, 2009 (2009)

Wang, Lin; Wang, Jiguang; Chen, Luonan, "Align Protein Surface Structures to Identify Evolutionally and Structurally Conserved Residues", Optimization and Systems Biology: Lecture Notes in Operations Research, v. 11, 2009, p. 296-303 (2009)

Zhang, Wenjuan; Tang, Wei-Hua; Wang, Jiguang; Liu, Zhiping; Zhao, Xing-Ming; Chen, Luonan, "Analysis of Transcriptome of Rice Anther", Optimization and Systems Biology: Lecture Notes in Operations Research, v. 11, 2009, p. 371-378 (2009)

Jiang, Biaobin; Wang, Jiguang; Xiao, Jingfa; Wang, Yong, "Gene Prioritization for Type 2 Diabetes in Tissue-specific Protein Interaction Networks", Optimization and System Biology, v. 11, 2009, p.319-328 (2009)

 
Research